Prefecturals are over and the Iwatobi Swim Club members are pleased by the progress they have made. A local summer festival gives them an opportunity to relax. When Nagisa finds out that Rin is also at the festival, he orders Rei to follow Rin and make sure that Haruka and Rin do not meet.

Haruka, Makoto, Nagisa, and Rei swim in their individual events. Rin becomes irritated as he remembers watching them swim back in grade school. Afterwards, the four Iwatobi Swim Club members must prepare for the medley relay.

As prefecturals draw near, Haruka and the other swim club members continue to improve. Meanwhile, Rin reveals his motivations for swimming. The swimmers must now show what they have accomplished at the tournament.

There's trouble at the beach. The four swim club members are forced to revisit their motivation to swim. After Rei asks Makoto about his odd behavior during the training camp, Makoto tells them about his past.

Haruka and the other club members decide to hold a training camp to prepare for prefectural. Each member follows his own regimen. However, Rei is unhappy about falling behind and heads back into the ocean at night to practice.

The Iwatobi Swim Club has a full roster now. As they begin to practice, they run into a little trouble. After a certain member claims that his swimsuit is to blame, the club makes a trip to buy new swimsuits.

The Iwatobi Swim Club needs one more member before it can participate in relays. Nagisa has set his sights on his classmate Rei, who is a member of the track team. Despite Rei's refusal to join, but Nagisa appears intent on recruiting Rei into the swim club.

Makoto and Nagisa watch with their breaths held as Haruka and Rin engage in an intense race. However, they notice that Rin appears to be have changed. At the same time, Nagisa prepares to start up a swim club with help from Rin's sister Gou.

The Iwatobi Swim Club must win to advance to nationals. As the tournament draws near, the members get nervous. Meanwhile, Rin grows increasingly irritated. As it comes time for the medley relay, each member must find their own answer as they step up to the start line

After hearing about what happened in the past, Rei goes to Samezuka Academy to ask Rin what he wants. The night before Iwatobi and Samezuka leave for regionals, Rin calls Rei to explain how he feels about the relay. And then, Samezuka announces its lineup for the relay.

Coach Sasabe begins training the Iwatobi Swim Club for the upcoming tournament. Meanwhile, Rei is unhappy about the fact that he's the only one who doesn't know about what happened with Rin in the past. After Rin expresses his frustration, Haruka decides to tell him about what happened when they were in grade school.

After spending their first year of high school in peace and quiet, Haruka and Makoto run into Nagisa, a new student who was a member at a swimming club with them when they were kids. That swimming club is being torn down, so the three of them sneak in to dig up a time capsule that they buried in the back, which is when they are reunited with Rin, the fourth member of their group who left to study abroad.

Judai has a lot to learn about his new deck as Edo’s Destiny Heroes continue to devastate him!

In his triumphant return to Duel Academy, Judai faces Edo Phoenix in a battle to save his dorm.

After roaming Academy Island for days without eating, Judai begins to hallucinate about his past duels.

After hitting rock bottom, Ryo encounters the sinister Monkey Saruyama who convinces him to join a dangerous underground dueling league!

Han, Hyoh, and Kaioh have come from their own schools to attack End of the Century Academy. And they're after... Ryuken?! The three brothers get over their hesitance and join Shin, Mr. Seed Rice, the Seed Class, Devil Ribako, Rin, and Bat in defending the school. How will the final conflict turn out?! The final battle rages between Kenshiro and Thouzer.